PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl010253

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 356aa MW: 38547.8 Da PI: 5.8568

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-22697	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00017	296	338	8	55
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r + R +++++a++ Lr+++P+ ++ a++Le A +++ksLq Pgl010253 296 RRKLRKEKVKKAINLLRSIVPEgH------SMDTAAVLEVASQHLKSLQ 338 5688999*************55......79**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.652	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-7	294	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.17E-4	294	342	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.8E-6	298	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
ANSAGLAAGF VTAITGDNAS LLEKHDYGAW NGGNSQELKQ VQLLDGLEVQ YSEAFSKRFI 60 IFDQTGSGVR VIVHPSLVYE FPNLLPDSAK GLDKINVHNR VPQKESISQI PSVYNSTDRG 120 TGLLAYREHM APAFTALQGI RKRRWLSAEA AGNGFVACSK QEETGSQMSC NGSSRGGYQS 180 QSHEDTRDLE ALLGSDEEED DSTGHTPSEA ITNDQQSGTQ DEAHISNGIP TKKRRCECME 240 FGEQEVDFIP SAIQETAVLN GKCISDGVCF PPVASQESGN GSSNNSASKV GQPSSRRKLR 300 KEKVKKAINL LRSIVPEGHS MDTAAVLEVA SQHLKSLQLK LERLEANQND KTLSKP

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

ANSAGLAAGF VTAITGDNAS LLEKHDYGAW NGGNSQELKQ VQLLDGLEVQ YSEAFSKRFI  60
IFDQTGSGVR VIVHPSLVYE FPNLLPDSAK GLDKINVHNR VPQKESISQI PSVYNSTDRG  120
TGLLAYREHM APAFTALQGI RKRRWLSAEA AGNGFVACSK QEETGSQMSC NGSSRGGYQS  180
QSHEDTRDLE ALLGSDEEED DSTGHTPSEA ITNDQQSGTQ DEAHISNGIP TKKRRCECME  240
FGEQEVDFIP SAIQETAVLN GKCISDGVCF PPVASQESGN GSSNNSASKV GQPSSRRKLR  300
KEKVKKAINL LRSIVPEGHS MDTAAVLEVA SQHLKSLQLK LERLEANQND KTLSKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.1606	0.0	root\| vegetative bud

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	C0PSI6	0.0	C0PSI6_PICSI; Uncharacterized protein