PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010277
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 354aa    MW: 39479.2 Da    PI: 6.4205
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-4249269PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.32e-129234924374
       GRAS  24 LarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaNqaIleavegeervHiiDfdisqG 122
                +++++ las +g +m ++a+yf+eALa+r+++  +         + + ++ +    +l++ f++++P+lkf+h++aNqaIl+a++g ++vH+iDf+++qG
  Pgl010277   2 VKEVRILASAQGGAMSKVATYFAEALARRIYGFLP-------QDTLRFNQNDPLSDVLQFhFYQTCPYLKFAHFIANQAILDAFSGYQQVHVIDFNLKQG 94 
                789999**************************333.......3333333333333333444*************************************** PP

       GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesv.sl 220
                +QWpaL+qaLa Rp+gpps+R+Tg+g+p+++ +++l+e+g +La++Ae+++v+f+f+  vak+l+d+++++L+ +p  Ea+aVn++l+lhrlld++   +
  Pgl010277  95 IQWPALIQALALRPGGPPSFRLTGIGPPQPDGTDALQEVGMKLAQLAESINVKFSFRGCVAKSLSDIKPWMLNARPdVEAVAVNSILELHRLLDDTIlGQ 194
                ****************************************************************************89***************9996256 PP

       GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                +s++d+vL  ++ l+Pk+v+vveqeadhn++ Flerf+eal+yys++fdslea   ++++e++++++++lgrei+n+vaceg+er+erhe l +W+ rl+
  Pgl010277 195 PSAIDRVLASIRALNPKIVTVVEQEADHNRPVFLERFTEALHYYSTVFDSLEARGLQATSEEQVMSEVYLGREICNIVACEGSERVERHEPLLNWSVRLR 294
                669************************************************88877888999999*********************************** PP

       GRAS 321 eaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +aGF p++l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  Pgl010277 295 NAGFWPMHLGSNAFKQASMLLSLFSgGEGYRVEENNGCLTLGWHSRPLIAASAWQ 349
                ******************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.3881328IPR005202Transcription factor GRAS
PfamPF035147.0E-1272349IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVKEVRILAS AQGGAMSKVA TYFAEALARR IYGFLPQDTL RFNQNDPLSD VLQFHFYQTC  60
PYLKFAHFIA NQAILDAFSG YQQVHVIDFN LKQGIQWPAL IQALALRPGG PPSFRLTGIG  120
PPQPDGTDAL QEVGMKLAQL AESINVKFSF RGCVAKSLSD IKPWMLNARP DVEAVAVNSI  180
LELHRLLDDT ILGQPSAIDR VLASIRALNP KIVTVVEQEA DHNRPVFLER FTEALHYYST  240
VFDSLEARGL QATSEEQVMS EVYLGREICN IVACEGSERV ERHEPLLNWS VRLRNAGFWP  300
MHLGSNAFKQ ASMLLSLFSG GEGYRVEENN GCLTLGWHSR PLIAASAWQC YLTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-62134841378Protein SCARECROW
5b3h_A3e-62134840377Protein SCARECROW
5b3h_D3e-62134840377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.69030.0needle| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826893.10.0DELLA protein GAI1
SwissprotQ84TQ71e-170GAI_GOSHI; DELLA protein GAI
TrEMBLX5CHV10.0X5CHV1_PINTB; DPL
STRINGERM941300.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-163GRAS family protein