PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010279
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 354aa    MW: 39954.3 Da    PI: 10.1992
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55335611PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-49027PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31284341359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYeg+Hnh+
  Pgl010279 284 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEDPSMLIVTYEGDHNHS 341
                99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.7E-19235280IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-33270341IPR003657WRKY domain
PROSITE profilePS5081130.228277343IPR003657WRKY domain
SuperFamilySSF1182904.84E-27280341IPR003657WRKY domain
SMARTSM007741.7E-37282342IPR003657WRKY domain
PfamPF031067.9E-27284340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MREVNNVEEA NRAGLESSYR VLAILSQQQQ QHQDQRHEIN TLSDLDMTTK EAISKFQKVV  60
SLLGARTGHA RFRRGLRQSP AYTKACMETP SYCFSQHVSP GLVYPPELSQ SPAPIRQFMP  120
SQNSTPAVFG MSAHHHRQQQ LYQQQQQQQQ QKLHYSQLQH QQQQQLSLQA ELMLRNNSFM  180
KFENSISCTP ALSSTKSFMS SLSIDGSVAN DKPPLLTYHQ LMNPVQEGAT VSSSKRKCSG  240
KGDEAGGKCR STGRCHCSKR RKLRVKRSIR VPAISSKLAD IPPDDYSWRK YGQKPIKGSP  300
HPRGYYKCSS VRGCPARKHV ERCLEDPSML IVTYEGDHNH SRKLSGSPNL VVHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20270340271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.251040.0root| somatic embryo| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805954.11e-101protein WRKY1-like isoform X1
TrEMBLA0A0D6QUH91e-118A0A0D6QUH9_ARACU; Uncharacterized protein
STRINGXP_008805954.11e-101(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-66WRKY DNA-binding protein 21