PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010289
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 353aa    MW: 39505.7 Da    PI: 7.7191
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55336860PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-40647PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.29e-129335321374
       GRAS  21 qalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis 120
                ++l+a++++ +s +gdpmqRl ay++e+L arla+s+  +ykal+++e +   s e l+++++++ev+P++kf++++aN aI ea++ e+rvHiiDf+i+
  Pgl010289   3 DKLIAEIRQVVSISGDPMQRLGAYMVEGLVARLASSGGIIYKALRCKEPT---SPELLSYMQVLYEVCPYFKFGYMAANGAIAEAFKDEDRVHIIDFQIG 99 
                6899*********************************************9...9********************************************** PP

       GRAS 121 qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218
                 G QW++L+qaLa+Rp+gpp++ iTg+++p s+  +   le +g+rL+k+Ae+++vpfef++ v    +d+++++L+++ g alaVn+++qlh+++desv
  Pgl010289 100 LGSQWVTLIQALAARPRGPPRVCITGIDDPLSNyaRGGGLELVGKRLSKLAETCNVPFEFHP-VPVMGADVQVNMLKCQAGHALAVNFSFQLHHMPDESV 198
                *****************************999888999************************.68899******************************** PP

       GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
                +++++rd+++++ k+l Pkv+++veqe+++n+++F+ rf+e+l+yy+a+f+sl+++lpres+eri+vE+++l+r+ivn++acegaer+erhe ++kW++r
  Pgl010289 199 NTSNHRDRIIRIAKGLAPKVLTLVEQESNTNTAPFFPRFMETLSYYTAVFESLDVTLPRESKERINVEQHCLARDIVNIIACEGAERVERHELMGKWKSR 298
                **************************************************************************************************** PP

       GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +++aGFkp+pls+ +++++k+ll+ + ++ y++ e++++l+lgW++rpL++++aW+
  Pgl010289 299 FTMAGFKPYPLSSIVNSTIKSLLEGYCQK-YSLLERDDTLYLGWSNRPLIAACAWQ 353
                ***************************66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.2791334IPR005202Transcription factor GRAS
PfamPF035143.1E-1263353IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
KIDKLIAEIR QVVSISGDPM QRLGAYMVEG LVARLASSGG IIYKALRCKE PTSPELLSYM  60
QVLYEVCPYF KFGYMAANGA IAEAFKDEDR VHIIDFQIGL GSQWVTLIQA LAARPRGPPR  120
VCITGIDDPL SNYARGGGLE LVGKRLSKLA ETCNVPFEFH PVPVMGADVQ VNMLKCQAGH  180
ALAVNFSFQL HHMPDESVNT SNHRDRIIRI AKGLAPKVLT LVEQESNTNT APFFPRFMET  240
LSYYTAVFES LDVTLPRESK ERINVEQHCL ARDIVNIIAC EGAERVERHE LMGKWKSRFT  300
MAGFKPYPLS SIVNSTIKSL LEGYCQKYSL LERDDTLYLG WSNRPLIAAC AWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-66635326375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.74420.0stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007049286.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_007049287.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_017982760.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A443NF930.0A0A443NF93_9MAGN; Scarecrow-like protein 21
STRINGEOX934420.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]