PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl010307

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 351aa MW: 39440.5 Da PI: 7.9418

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-23514	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	190	209	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Pgl010307 190 FSCPVCAKTFNRYNNMQMHM 209 89*****************9 PP
2	zf-C2H2	10.7	0.0017	275	297	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k+F + + ++H +++ Pgl010307 275 FMCCKCKKTFAVRGDWRTHEKNC 297 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.76E-5	175	212	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.8E-6	190	209	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.159	190	217	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	190	212	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	192	212	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	238	270	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.72E-5	257	295	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.2E-4	262	295	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	99	275	295	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MNTKSDNLHQ YTSVGTVAAA AANSISFTES IKPLEPPIDS TSNPRLPVAI PCPDSFVGHQ 60 VPSHAANDAN INDQSRVFFQ QLQQPLKGYC ESPPLREELP LLLSLSPPRE KRSGEEKFRS 120 DPEENAMVSL QIGPPNSLSE KSELTLKSTD SSDADKEIYC SPDQKAEQDF QKANIGYLHL 180 HKFSLGATQF SCPVCAKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA ILLRLPCYCC 240 TQGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCCKC KKTFAVRGDW RTHEKNCGKL 300 WYCSCGSDFK HKRSLKDHIR AFGQGHAPIA PDSFEDEEDL GSEDEVSVLS H

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MNTKSDNLHQ YTSVGTVAAA AANSISFTES IKPLEPPIDS TSNPRLPVAI PCPDSFVGHQ  60
VPSHAANDAN INDQSRVFFQ QLQQPLKGYC ESPPLREELP LLLSLSPPRE KRSGEEKFRS  120
DPEENAMVSL QIGPPNSLSE KSELTLKSTD SSDADKEIYC SPDQKAEQDF QKANIGYLHL  180
HKFSLGATQF SCPVCAKTFN RYNNMQMHMW GHGSQYRKGP ESLRGTQPTA ILLRLPCYCC  240
TQGCRNNIDH PRAKPLKDFR TLQTHYKRKH GIKPFMCCKC KKTFAVRGDW RTHEKNCGKL  300
WYCSCGSDFK HKRSLKDHIR AFGQGHAPIA PDSFEDEEDL GSEDEVSVLS H

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.23399	0.0	stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021278475.1	1e-108	zinc finger protein WIP2-like
Swissprot	Q8W031	2e-97	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A9NQR7	1e-145	A9NQR7_PICSI; Uncharacterized protein
STRING	XP_002526735.1	1e-107	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	2e-98	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]