PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl010409

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

VOZ

Protein Properties

Length: 343aa MW: 38452.1 Da PI: 4.6432

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55336812	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-44837	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	390	5.9e-120	138	337	1	200
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsl 100 ppp+aflgpkcalwdc+rpaq sew+q+ycs fh alneg+pg+ pvlrp+gidlkd+llfaal ak+ gk vgipecegaatakspwna+elfdl + Pgl010409 138 PPPAAFLGPKCALWDCPRPAQRSEWCQEYCSIFHGIAALNEGTPGMIPVLRPGGIDLKDALLFAALGAKTMGKAVGIPECEGAATAKSPWNAPELFDLFF 237 89************************************************************************************************ PP VOZ 101 legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkv 200 l+ge +rewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmk++gg krsyymdpqpss+fewhl+eye+n++da+ lyrlelk+vd+kk++kg+ Pgl010409 238 LQGEVVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKDLGGVKRSYYMDPQPSSQFEWHLFEYEMNNCDACVLYRLELKQVDSKKNTKGRW 337 ***********************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
XSPATSLLAA SLCSSGLSSD MWRLLQLHEE EDDATSVLAE PCSPELHLNK TIPEDANPTS 60 FHEDFFVDHV KTQAQTIDGT SRSENIHAES FLQIIDEGLE AVAQMDRDFN HNLCLSFDPE 120 VEEETIPEFQ GPCPGICPPP AAFLGPKCAL WDCPRPAQRS EWCQEYCSIF HGIAALNEGT 180 PGMIPVLRPG GIDLKDALLF AALGAKTMGK AVGIPECEGA ATAKSPWNAP ELFDLFFLQG 240 EVVREWLFFD KPRRAFESGN RKQRSLPDYS GRGWHESRKQ VMKDLGGVKR SYYMDPQPSS 300 QFEWHLFEYE MNNCDACVLY RLELKQVDSK KNTKGRWATT LDR

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

XSPATSLLAA SLCSSGLSSD MWRLLQLHEE EDDATSVLAE PCSPELHLNK TIPEDANPTS  60
FHEDFFVDHV KTQAQTIDGT SRSENIHAES FLQIIDEGLE AVAQMDRDFN HNLCLSFDPE  120
VEEETIPEFQ GPCPGICPPP AAFLGPKCAL WDCPRPAQRS EWCQEYCSIF HGIAALNEGT  180
PGMIPVLRPG GIDLKDALLF AALGAKTMGK AVGIPECEGA ATAKSPWNAP ELFDLFFLQG  240
EVVREWLFFD KPRRAFESGN RKQRSLPDYS GRGWHESRKQ VMKDLGGVKR SYYMDPQPSS  300
QFEWHLFEYE MNNCDACVLY RLELKQVDSK KNTKGRWATT LDR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.13471	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011626288.1	1e-143	transcription factor VOZ1
Refseq	XP_011626289.1	1e-143	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-124	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	W1Q0P1	1e-142	W1Q0P1_AMBTC; Uncharacterized protein
STRING	ERN14021	1e-142	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-115	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]