PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010644
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 325aa    MW: 35640.6 Da    PI: 7.2551
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55338504PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-13969PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-1368112347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++ ++ + ++lG+g+W+ I+r + + Rt+ q+ s+ qky
        Pgl010644  68 PWTEEEHKMFLLGLHKLGKGDWRGISRNFVTSRTPTQVASHAQKY 112
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.16161117IPR017930Myb domain
SuperFamilySSF466891.79E-1763118IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-1864116IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.7E-1165111IPR009057Homeodomain-like
SMARTSM007177.9E-1165115IPR001005SANT/Myb domain
PfamPF002492.9E-1168112IPR001005SANT/Myb domain
CDDcd001671.41E-968113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGTTPELVXD RGVKLFGVRL TTDEPMRKSL SMGNLPLTPE QSESGAAEDG YVSDGLVHNS  60
RERKKGVPWT EEEHKMFLLG LHKLGKGDWR GISRNFVTSR TPTQVASHAQ KYFLRQSNLN  120
KRKRRSSLFD ISTDSVEDCY QGIPELSPVM HELSLGQNSS LTSGNFFETG GAPPNLAASV  180
GAFSVPPLAA SRPVNPPCLS LGMFRLDKSD DDERTRDEAK YSSLKMAERQ ETGHYSNPTS  240
HYSFTLPFWP ELATKTSNII KPSAPTSPAM EARESIENSG LSLSIAPPCV DPPPPHNTLN  300
LDQSNSRRSA FRSSNLDSSN AISVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.92850.0needle| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396943.11e-68uncharacterized protein LOC112292572
TrEMBLA0A3G6JAG30.0A0A3G6JAG3_PINTA; Myb-related protein S3
STRINGPP1S66_90V6.14e-68(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-52MYB_related family protein