PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010724
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 319aa    MW: 35524.7 Da    PI: 7.2182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-11897PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05156175120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++C  C+k+F+r  n++ H+
  Pgl010724 156 FSCAVCNKTFNRYNNMQMHM 175
                89*****************9 PP
2zf-C2H212.30.00051240262123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C +C+k F  + + ++H +++
  Pgl010724 240 FACRKCSKAFAVRGDWRTHEKNC 262
                78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.91E-5136177No hitNo description
PROSITE profilePS5015710.221156183IPR007087Zinc finger, C2H2
PfamPF128741.1E-4156175No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5156175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.34156178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
PROSITE profilePS508688.086198214IPR003616Post-SET domain
SuperFamilySSF576674.65E-6221260No hitNo description
Gene3DG3DSA:3.30.160.604.2E-5226260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035578240260IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDPLVSHLPA GFPFPYDHSA AVSSPTYRAQ ADSSSLLSFR HLPYAHPISS HHKPTPPQND  60
ADDFDEEEEP ILSLRPPGQT DPALKKSNTQ PSYATEEESD DNVTVALHIG PPTSVPLDCD  120
AVSSVNDGCF QAKERPAMGQ YWIPTPSQIL VGPTQFSCAV CNKTFNRYNN MQMHMWGHGS  180
QYRKGPDSLR GTKPSAIMRL PCYCCAPGCR NSIDHPRSKP LKDFRTLQTH YKRKHGMKPF  240
ACRKCSKAFA VRGDWRTHEK NCGKLWFCTC GSDFKHKRSL KDHIRAFGQG HAPHGVESCE  300
DDDDPPSEEV DDVNSGTSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.124500.0somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396645.11e-131zinc finger protein WIP6-like
SwissprotQ9FX681e-113ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2K1JDJ61e-130A0A2K1JDJ6_PHYPA; Uncharacterized protein
TrEMBLA9TCE81e-130A9TCE8_PHYPA; Predicted protein
STRINGPP1S359_44V6.11e-132(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-115C2H2-like zinc finger protein