PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010746
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HB-other
Protein Properties Length: 318aa    MW: 35382.5 Da    PI: 7.8383
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55346496PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-32247PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.38e-062584956
               HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
   Homeobox  9 keqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
               +++++e+e++ e      p ++++  LA+k            ++ +qV +WFqNrR  +k
  Pgl010746 25 PQEVQEMEKFLEDgkGAVPPRDTISSLAEKFsaaperagkiLVQWKQVWTWFQNRRHAQK 84
               666777777777333677888888888888888888888778899***********8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.7782286IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-52286IPR009057Homeodomain-like
SuperFamilySSF466893.12E-82287IPR009057Homeodomain-like
PfamPF167193.3E-40124252IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
SSSRWSYYMM GRPPASGAPV FRFFPQEVQE MEKFLEDGKG AVPPRDTISS LAEKFSAAPE  60
RAGKILVQWK QVWTWFQNRR HAQKAKGTKV PGNTAPSPRD DSGAKRVVTN SAAVPSGRNV  120
LVASEMEFEA KSARDGAWYD VASFVTHRMF ESGDPEVRVR FAGFGAEEDE WVNVKKCVRQ  180
RSLPCEASEC VVMLSGDLVL CFQEGKEQAL YFDAHVLDAQ RRRHDARGCR CRFLVRYDHX  240
PEISKSTSQV IEENVQSLTA PKTSSVFQAQ EGLSAESQSN LLATEIHSSQ KTVAPAFTDM  300
DKPSNSMVDA TAKSKVQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A5e-421232381116SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B5e-421232381116SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A5e-421232381116SHH1 SAWADEE
4iur_B5e-421232381116SHH1 SAWADEE
4iut_A5e-421232381116SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B5e-421232381116SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A5e-421232381116SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B5e-421232381116SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A5e-421232381116SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B5e-421232381116SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275167.11e-121PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_010275168.11e-121PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-101SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLD5ACD81e-172D5ACD8_PICSI; Uncharacterized protein
STRINGXP_010275166.11e-121(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-90sequence-specific DNA binding transcription factors;sequence-specific DNA binding