PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl010875

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 311aa MW: 35085.3 Da PI: 5.8349

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-1943	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.5	7.2e-21	83	138	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe +F+++++p+ ++r+eL+++l+L+ rq+k+WFqN+R+++k Pgl010875 83 KKRYHRHTQHQIQELEMFFRECPHPDDKQRQELSRRLSLEPRQIKFWFQNKRTQMK 138 688999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-21	71	141	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-20	72	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.313	80	140	IPR001356	Homeobox domain
SMART	SM00389	1.8E-18	81	144	IPR001356	Homeobox domain
Pfam	PF00046	3.3E-18	83	138	IPR001356	Homeobox domain
CDD	cd00086	1.14E-18	83	141	No hit	No description
PROSITE pattern	PS00027	0	115	138	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	12.621	262	311	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MPEGLMVHAR HLPSLIACQS KPSYTSSGLS LAPPRLVEER QKSQTAETDL DKMREEEFES 60 KSGSENIEGA SGEDQDADPR SRKKRYHRHT QHQIQELEMF FRECPHPDDK QRQELSRRLS 120 LEPRQIKFWF QNKRTQMKAH HERQDNLMLK SENEKLRLDN MRYRDALSSI SCPNCGGPAT 180 LGEISFDEQQ LRIENAKLRE EVDRISGIAA KYVGKPLPSS VTRLNTLPSS TLDLGSGAGS 240 SCLGDFHGTS GGDIVSRHVG LAESEKPLVV EVAVAAMEEL VQMAQVCDPL WTTRFEDGCE 300 ILCQEEYSRS S

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008808987.1	1e-121	homeobox-leucine zipper protein ROC2-like
Swissprot	Q0J9X2	1e-104	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	Q9FR59	1e-134	Q9FR59_PICAB; Homeobox 1
STRING	XP_008808987.1	1e-120	(Phoenix dactylifera)

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]