PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl011006
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 305aa    MW: 33804.1 Da    PI: 4.3313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55349121PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-37901PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12190232855
                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ErrRR ++N+++ +Lr+l+Pk      +K++Ka+i+  A+ YI++Lq
  Pgl011006 190 LERRRRGQLNERLYTLRSLVPKI-----TKMDKASIVGDAIGYIQDLQ 232
                6*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.027182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-15188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15189250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-13189234No hitNo description
SuperFamilySSF474592.62E-16189250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10190232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEHTPRVGIS TMCANSSVDM FDFNGHALME AAPAHVGDHN GLLFCTDLIQ GNSGTGSLNP  60
VSPYSSSPFP AVDLKGWNFA TSDSLWASHD LPLKPDENFQ AQLYEASELL TRNESENLIS  120
FTQDHPSFHP FGGLDIPGET NLFGGWTPQG RVDKKETNCG YSSDELDDFK EEDENGSPDG  180
RFSQPETLLL ERRRRGQLNE RLYTLRSLVP KITKMDKASI VGDAIGYIQD LQKEAKDIRD  240
EIEGLRSNVS HQNDSKALER PDSTVSGLDN EMQSYEDENG NTSSPNEAPT SPTLDVISFH  300
VFRLF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.200220.0root
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-21bHLH family protein