PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl011182
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 298aa    MW: 32826.2 Da    PI: 7.8474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55344374PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-4726PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.4e-06270292223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp+Cg+ Fs++ +L++H  + H
  Pgl011182 270 VCPKCGRGFSNPVSLVQHVEKdH 292
                7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.2E-12651No hitNo description
PROSITE profilePS510398.0281059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.4E-101153IPR000058Zinc finger, AN1-type
SMARTSM001543.5E-61352IPR000058Zinc finger, AN1-type
PfamPF014283.0E-131351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.3E-1190146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.94E-993146No hitNo description
PROSITE profilePS510398.20798145IPR000058Zinc finger, AN1-type
SMARTSM001541.1101142IPR000058Zinc finger, AN1-type
PfamPF014281.6E-8101141IPR000058Zinc finger, AN1-type
SMARTSM003553233256IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642233261IPR007087Zinc finger, C2H2
SuperFamilySSF576675.03E-6234288No hitNo description
PROSITE patternPS000280235256IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681269297IPR007087Zinc finger, C2H2
SMARTSM003553.3269292IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280271292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGTPEFPDLG KHCTVEDCRL VDFLPFDCDR CKQVFCLEHR TYSQHHCPNA NEHDVTVLVC  60
PMCAKGVRLI PNEDPNITWE SHVSTDCDPT NYDRVKKKPR CPAPGCKEIL TFANKVKCRD  120
CAQEICLKHR FGLDHKCPGP KKVEGNFTFS GIFGKNPKEK AMANARAHSS PSSSTSQSLR  180
SGLFSAVSNL RASAEVGMTK LSSATNYVFN RVKSSALSTQ QSQEGNMQPV LAEECPRCGA  240
RFSSVAFLVD HVESFHESGH KGGFQELPDV CPKCGRGFSN PVSLVQHVEK DHGGTSIH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399RVKKKPR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916320.11e-123zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ0D5B91e-108SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLD5ABE60.0D5ABE6_PICSI; Uncharacterized protein
STRINGXP_008784866.11e-122(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.14e-99C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]