PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl011184
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 298aa    MW: 35336.4 Da    PI: 4.9391
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55348342PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-5588PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.32e-131493986
   trihelix 39 rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
               +e+g+++sp+qC++k+++lnkryk++ +  +++ +++++++ +++d+++
  Pgl011184  1 MEKGYNVSPQQCEDKFNDLNKRYKRLDDVLGRGtACTVVENPSLLDSMD 49
               699******************************55************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-9275No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEKGYNVSPQ QCEDKFNDLN KRYKRLDDVL GRGTACTVVE NPSLLDSMDH LTPKAKEDVR  60
KILSSKHLFY REMCSYHNGG RIHAESDHSV MPAWANLRSG ERNEEIRPMT EEMDDEENED  120
EDTEDEEEDE ENDENEGGFE MEGGVGEFMK RPRMIQGMYF GTQEGERLNT LYNFNQEMMG  180
VLQDGTRTEW QKRQWMRNRT MQLAEQKVGI QARAFELEQQ CLKWKRLRSK KDREFDRLKL  240
ENERMKLETE QLKLQLKKKE LGFESKRSDA SISSLSALHM DQMHRREQHD IHSEERVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229238KKDREFDRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.54180.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R0055e-87A0A0D6R005_ARACU; Uncharacterized protein
STRINGXP_010246931.13e-74(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.15e-42