PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl011200
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 297aa    MW: 33799.1 Da    PI: 5.4643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55332217PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-320PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.8e-074973123
               EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
               ++C+   Cgk+Fs+  nL++H++tH
  Pgl011200 49 FVCTfeGCGKVFSSEFNLNQHLKTH 73
               89**********************9 PP
2zf-C2H217.51.2e-0580103223
                EET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                +Cp   C+k++ + s Lk Hir+H
  Pgl011200  80 TCPyeECDKRYAHESKLKAHIRSH 103
                69999******************6 PP
3zf-C2H213.80.00017141166123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                ++Cp   C+k +++ + L+ H+r+ H
  Pgl011200 141 FSCPyeLCNKFYKHEYKLNLHLRReH 166
                89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.138327IPR007087Zinc finger, C2H2
SMARTSM003552.5327IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-7327IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.1E-5327No hitNo description
PROSITE patternPS000280527IPR007087Zinc finger, C2H2
SuperFamilySSF576676.24E-123482No hitNo description
Gene3DG3DSA:3.30.160.603.5E-173676IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.2E-54973IPR015880Zinc finger, C2H2-like
PfamPF138947.0E-44973No hitNo description
PROSITE profilePS5015712.7574978IPR007087Zinc finger, C2H2
PROSITE patternPS0002805173IPR007087Zinc finger, C2H2
PROSITE profilePS501579.80679108IPR007087Zinc finger, C2H2
SMARTSM003550.08379103IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.22E-580103No hitNo description
Gene3DG3DSA:3.30.160.607.0E-880103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028081104IPR007087Zinc finger, C2H2
SuperFamilySSF576675.22E-5136163No hitNo description
Gene3DG3DSA:3.30.160.604.4E-6138164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.81141166IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.725141167IPR007087Zinc finger, C2H2
PROSITE patternPS000280143166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
XAFLCSAEGC GRIFTEATAM RRHGQTHMKC PDATMLKRNL LTHTGEKQFV CTFEGCGKVF  60
SSEFNLNQHL KTHSKENYRT CPYEECDKRY AHESKLKAHI RSHHEKNWVP DVKSTALVEK  120
ESANPRLLTP IAGAATLDRP FSCPYELCNK FYKHEYKLNL HLRREHAVPA HEENEKQVRT  180
SDVEDEMDEG SEQDENVGKV GIISSSGRGK LRIISKPSPE SSLKRKHSSV APVDLNIKAN  240
PKAPIGRSGL FAKEESEEDS EKTEEDKEDT EDEGWGNRMN IETEDDEDDE ETEDERS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-2351038117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246046.16e-71PREDICTED: uncharacterized zinc finger protein At4g06634
TrEMBLD5ACC00.0D5ACC0_PICSI; Uncharacterized protein
STRINGXP_010246046.12e-70(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.24e-57C2H2 family protein