PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl011222
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 296aa    MW: 33675 Da    PI: 9.9317
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55351501PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-14816PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.61e-2036121286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                Wt+ e+ +Li+a++e++ +l+rg+lk+ +Weev++ +  r +g+  ++s++qC++k+e+l+kry+ +k++++     + s++++f++++
  Pgl011222  36 WTELETNHLIDAYQEKWYALKRGQLKARHWEEVANLVflRCGGLepSKSSVQCRHKIEKLRKRYRTEKQQQGIT---RGSRWVFFERMD 121
                ***********************************9998999995578*********************99973...4457*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4813496IPR017877Myb-like domain
PfamPF138375.5E-2135123No hitNo description
SMARTSM005952.7E-943128IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAAASSSSGG GQQDDGGGGG IVAPHMIIHR KPPGPWTELE TNHLIDAYQE KWYALKRGQL  60
KARHWEEVAN LVFLRCGGLE PSKSSVQCRH KIEKLRKRYR TEKQQQGITR GSRWVFFERM  120
DQLENGPRAD SVIVPNGRQL TEHDSDTADN NYNHNNSDHP RSFHYQGGLP LDEAVPAPFL  180
SLKNGSVDVK FAPSSRLNVK RRNIEPQSQQ PQFQPQPQPQ PQPSSELAAV IRSLGEGFLR  240
IEQMKLEMQR DNERLRMEME MKRTEMILES QQHMADVIAR ALSSKKRAKR LQSPDL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.39950.0somatic embryo| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828075.12e-67trihelix transcription factor ASIL1
TrEMBLA0A0C9S7D61e-117A0A0C9S7D6_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_8971_1946 transcribed RNA sequence
STRINGERM954917e-67(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-28Trihelix family protein