PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl011413
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YA
Protein Properties Length: 288aa    MW: 31086.3 Da    PI: 9.6063
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-11149262PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.31.1e-32108163258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 p+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh hAlrR+Rg+gGrF
  Pgl011413 108 PPVYVNAKQYHGILRRRQSRAKAESENKL-IKSRKPYLHESRHLHALRRARGCGGRF 163
                59***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-37105166IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.558106166IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.5E-28109163IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.0E-24109131IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860111131IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.0E-24140163IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQNVTTKLVG TESSPSDEQQ KQPPQQQQVL PTGISPAHAE FMTRQTQLEL GHSGGDTLWQ  60
ARTAYPYPDP FYGNYVAAYG AQAMIPPHML GVHQAGLPLP PSDAVEEPPV YVNAKQYHGI  120
LRRRQSRAKA ESENKLIKSR KPYLHESRHL HALRRARGCG GRFLNTKKDG NNQEVVSGDQ  180
DSHDSIGQDN KVVNSDSGKD GALQVSNRIQ RTDDVAYIGN GISTHSGTVA SGQVGVGISV  240
SNGTHFNYPQ RRGFHSSAFH SLSSGKAESG QVGGMVSNGG RHTAVATQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-20107167262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388758.18e-74nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLD5AE550.0D5AE55_PICSI; Uncharacterized protein
STRINGPP1S31_299V6.13e-73(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.14e-48nuclear factor Y, subunit A7