PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl011422
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 288aa    MW: 31631.6 Da    PI: 6.9359
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-40795PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26050.17.9e-162554497
     DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
                +++a+p+++r+++++sl+yeA+ r+ +Pv+Gavg+++++++ql+q+++e++l 
  Pgl011422  2 AFISAVPDHQRPALFQSLLYEACGRTVNPVNGAVGLLWSGNWQLCQAAVETVLK 55
               58999*******************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.091159IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-11253IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAFISAVPDH QRPALFQSLL YEACGRTVNP VNGAVGLLWS GNWQLCQAAV ETVLKGGTLR  60
PPQSSSVIPT CSTRPSLMNS LSANFRVNSN VNNINSINSS SRPSLEVGKA RPVNEMREMY  120
TVKPEVDFPL NRLQESCNPH QPWAAKVKSE PHDLSLCEAF EAVRHNQTII HLPPSEIAAP  180
PRRVRQRIEG INEVNYQDLS NSNSDDVKCL GDFDFHPSTG MELKANLDLT LNFEASSSSH  240
FKRRVSSPSI VSVNSEGSVT SLESGSLRVP NEKDSSAAKE HKVLDLFP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.100650.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3G6JFC70.0A0A3G6JFC7_PINTA; ASYMMETRIC LEAVES 2-like protein 39
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-34LOB domain-containing protein 37