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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||||||||||
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| TF ID | Pgl011516 | ||||||||||||||||
| Organism | |||||||||||||||||
| Taxonomic ID | |||||||||||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | Trihelix | ||||||||||||||||
| Protein Properties | Length: 284aa MW: 34131.4 Da PI: 5.5244 | ||||||||||||||||
| Description | Trihelix family protein | ||||||||||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 30 | 1.4e-09 | 29 | 73 | 1 | 45 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergfer 45
+W +qe+++ i++r e+e+++ ++k++k+lWe ++ km+++ e
Pgl011516 29 QWGHQETREFIAIRAELEKDFTQTKRNKTLWEIIAGKMKSKDTEE 73
7*************************************8876654 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 4.6E-7 | 29 | 112 | No hit | No description |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 284 aa Download sequence Send to blast |
MAALPLQSPS MDAEMNQCQL KRKDDRIPQW GHQETREFIA IRAELEKDFT QTKRNKTLWE 60 IIAGKMKSKD TEEAQSSVNA SGKILLTATR AKKPQGQIME DSALFFEELD AIFKERERNM 120 DRLLLESKAG MKPKEKVRRF KRLLGEKSSD DYSEDEEDEE DDSEEEKIIK RKKSKADKER 180 QRVTADKYRA NSMQEVLEDF FQQQQRFEEQ WREAVEGREE ERRLREREWR IAMEKLEKER 240 VMKEQAWRER EDQRRAREEV RAERRDELFA ALINKLTQEE RSHI |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Pgl.27317 | 0.0 | stem | ||||
| Annotation -- Protein ? help Back to Top | |||||||
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| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024381970.1 | 4e-73 | trihelix transcription factor GT-3b-like | ||||
| TrEMBL | A9P2A3 | 1e-124 | A9P2A3_PICSI; Uncharacterized protein | ||||
| STRING | PP1S285_47V6.1 | 2e-72 | (Physcomitrella patens) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT5G01380.1 | 2e-14 | Trihelix family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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