PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl011564
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 282aa    MW: 32052.2 Da    PI: 7.7769
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25723794PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.7e-15448147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT++E+++++da k++G   W+   +++g ++++ q++s+ qk+
        Pgl011564  4 RERWTEDEHKKFLDALKLYGRS-WRHMXEHIG-TKSAVQIRSHAQKF 48
                     78******************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.077153IPR017930Myb domain
SuperFamilySSF466891.94E-14254IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-14251IPR006447Myb domain, plants
SMARTSM007171.5E-11351IPR001005SANT/Myb domain
PfamPF002491.4E-12447IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-8444IPR009057Homeodomain-like
CDDcd001677.00E-9649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
XKQRERWTED EHKKFLDALK LYGRSWRHMX EHIGTKSAVQ IRSHAQKFFT KLEKGASTGT  60
SSTMTYQYLE IPPPRPKRKP GHPYPKKTGV IDRGGDFSIL EEDSRTRGCE VSERECSKLT  120
ELAQHNSKSR SLDKPKMTQG TSQPSRMSTS LKLFGHTLVV QNSFTDDFLF TSVENEAICS  180
EIYPENKDAP CEDEILDCRR IRKDTFSPEE SETDTFQSVN NSTGKTTIHK SSVFSNTNWS  240
PALLNSCHSS SSENENIQCS YPQVLRDGGL EDGYNKNLKC LT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NW270.0A9NW27_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.35e-26MYB_related family protein