PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl011606
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family DBB
Protein Properties Length: 280aa    MW: 30214.2 Da    PI: 4.9484
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-37734PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.94.1e-08444539
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                C+ +e+  ++  C+ ++  lC++C  + Hk       H++
  Pgl011606  4 QCDACEKAAASVVCFADEAALCAECDIKVHKAnklaskHKR 44
               7******99*********************88788888876 PP
2zf-B_box32.61.6e-105486335
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                 +C+ ++ek ++ fC +++ +lC+dC ++ H+
  Pgl011606 54 LSRCDICQEKAAIVFCLEDRAMLCQDCDESVHS 86
               679*****************************4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.67147IPR000315B-box-type zinc finger
CDDcd000216.93E-6347No hitNo description
SMARTSM003368.0E-8447IPR000315B-box-type zinc finger
PfamPF006432.0E-6445IPR000315B-box-type zinc finger
SMARTSM003365.4E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501199.845299IPR000315B-box-type zinc finger
PfamPF006431.8E-95495IPR000315B-box-type zinc finger
CDDcd000218.34E-95698No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MKIQCDACEK AAASVVCFAD EAALCAECDI KVHKANKLAS KHKRLALVGT SPKLSRCDIC  60
QEKAAIVFCL EDRAMLCQDC DESVHSPDTL AAKHQRFLAT GIRVVALNAQ SLESQGLSEF  120
NKQPTSISNS TAPAHAGPRM GSAHSSLAKP IPLGEPSWSV DELLPLSDFE SKGDPDGLGY  180
FDWEVDGFDH LGLFEHEQEE ALACRVPQLS PTGPAGGKPS FTVKGKSKTE IPTVPDFDGA  240
CIVPDSDEAC IVPDMGSLDT HEFYPTPPPK RMRRSSFEAW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.37550.0cone| needle| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PQL70.0C0PQL7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.12e-56DBB family protein