PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl011627

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 279aa MW: 31645.8 Da PI: 6.2724

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55335522	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-4950	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.1	3.3e-25	1	69	17	86
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 m++++++ k+plWee+s m+ gf+rs+k+Ckekwen+nk+++k+k+++kkr +++ +tcpyfdql+ Pgl011627 1 MDTKFQEPGFKGPLWEEISTGMACLGFHRSAKRCKEKWENINKYFRKTKDNMKKR-PQNAKTCPYFDQLN 69 68999999******************************************8.99999*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.91E-21	1	49	No hit	No description
Pfam	PF13837	1.2E-16	2	69	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDTKFQEPGF KGPLWEEIST GMACLGFHRS AKRCKEKWEN INKYFRKTKD NMKKRPQNAK 60 TCPYFDQLNL LYSNNPRSSK MEGHSSDDQA DPDHDNNNDN NNNGEDDEHA QIRPSDSELL 120 AAMIHGDQAG GTSLAKNNAA TTTVHDHFFQ DGHPVDQVQK RFKTKQHLPA GIQASNPLVI 180 ISEGGSKLNA FEDTFSGNIK KGATMDSLVK EMLEMQQQKF LDAFDRREHE QDQQQSMSSE 240 ERQQRHHHPE ETTQDDRSQS ALMALVHKLT VNATDYATG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.26674	0.0	somatic embryo\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9S5C5	7e-69	A0A0C9S5C5_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12946_2942 transcribed RNA sequence

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-31	Trihelix family protein