PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl011830
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 271aa    MW: 30670.7 Da    PI: 5.4406
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25777419PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS158.55.8e-494264126374
       GRAS 126 paLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll....... 214
                p++++aLa Rp+gpp  lR+T +++            +   +rL+++A++l++++e nv +a+ l++l+ e+L +k++Eala++ +++lh+ll       
  Pgl011830   4 PTFIEALARRPAGPPsLLRLTIIADTLGApfsAGPPCNDFPNRLKRYAKSLNLDMEVNV-IAQPLDSLTREALGIKEDEALAICAQFRLHQLLeegldkn 102
                799********8888679*******55448888999**********************9.7********************************9999888 PP

       GRAS 215 ...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhe 310
                   d+++++  +rd+++k++k+l+P v+ ++++++dh+ ++F erf +++++ + ++ds+++ +   + eer++vE e  +  +vn va  ga+r+er+e
  Pgl011830 103 egkDNQLTSVPPRDKFIKFIKDLNPLVFFLSDNDIDHSFPDFIERFKNSVDHLWRFLDSTSVCFKGREcEERRMVEGE-AAMGLVNNVAYDGASRVERNE 201
                877666666669************************************************988876666*********.88999999************* PP

       GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +  +W +r++e GF     s+k+ + ak++lrk++s+ +++  e+g++ l+Wk++p++++S W+
  Pgl011830 202 SHLSWGNRVREGGFVCEIPSDKIIDCAKAMLRKHDSN-WEMRLEDGCISLCWKSHPVTFCSLWK 264
                ***********************************66.899999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.6061245IPR005202Transcription factor GRAS
PfamPF035142.0E-464264IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
XNGPTFIEAL ARRPAGPPSL LRLTIIADTL GAPFSAGPPC NDFPNRLKRY AKSLNLDMEV  60
NVIAQPLDSL TREALGIKED EALAICAQFR LHQLLEEGLD KNEGKDNQLT SVPPRDKFIK  120
FIKDLNPLVF FLSDNDIDHS FPDFIERFKN SVDHLWRFLD STSVCFKGRE CEERRMVEGE  180
AAMGLVNNVA YDGASRVERN ESHLSWGNRV REGGFVCEIP SDKIIDCAKA MLRKHDSNWE  240
MRLEDGCISL CWKSHPVTFC SLWKPCLNEP T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-184265214474Protein SHORT-ROOT
5b3h_B2e-184265160420Protein SHORT-ROOT
5b3h_E2e-184265160420Protein SHORT-ROOT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.12e-49GRAS family protein