PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl011834
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 271aa    MW: 29685.6 Da    PI: 9.5707
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40930746PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-0753841647
                     HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
        Pgl011834 53 LEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 84
                     589****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.993924IPR001878Zinc finger, CCHC-type
SuperFamilySSF466891.37E-85190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-45183IPR009057Homeodomain-like
CDDcd001670.003925385No hitNo description
TIGRFAMsTIGR015571.8E-95388IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAKELLKMCS HCGHSGHSSR ACPDRGSVKL FGVRLIATND GMACMRKSLS MXLEKLGKGD  60
WRGISRNFVT TRTPTQVASH AQKYFLRQSS LNKRKRRSSL FDMCPRDTHV TSSLRREDSL  120
GNLYEFSPKH SALGISANLE LYSFGVSPTL SLGRSLQPVE PVLEEKEAHD CAVNSEEDTS  180
SMSSTTDAPS KEKKPWLSTA PQKFQLSLWP ELELMTSSNT SSGKENGMKP MVAGMPVHCG  240
GNTDLSLSIA LPPRNTSLNF QGSLSSAIRV V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.277080.0needle| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024519624.12e-34transcription factor MYBS3 isoform X2
TrEMBLA9P0631e-152A9P063_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-17MYB_related family protein