PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl012072

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 260aa MW: 28951.8 Da PI: 9.7822

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-6549267	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.5	7e-34	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk++l+ m+vkgLtl+h+kSHLQkYRl Pgl012072 48 KPRLRWTPELHERFVDAVSQLGGPDKATPKSVLREMGVKGLTLYHLKSHLQKYRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.463	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-32	46	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-25	48	103	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.79E-17	48	103	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-10	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	9.3E-24	144	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEYPSNPGIV LNHGRAPSQP ERQHQQPALT GSSHYPCDPG VVVSADPKPR LRWTPELHER 60 FVDAVSQLGG PDKATPKSVL REMGVKGLTL YHLKSHLQKY RLGKQPHREV SVDRSNDGGS 120 SDGGHCLSRM ARDSSITPNH KEAMQIADAL RAQIEVQRRL HDQLEVQRRL QLRIEAQGKY 180 LQAILEKAQQ TLASEASTSA GIEATRAKLA DLASKLPTNS VRPNYSAMKV APLMDMHRQD 240 HGDLELKPHL RDRCSQISLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-20	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.16246	0.0	root\| somatic embryo\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_566744.1	8e-72	Homeodomain-like superfamily protein
Refseq	XP_006369801.1	1e-71	protein PHR1-LIKE 3
Swissprot	Q94A57	7e-73	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A3G6JCJ0	1e-176	A0A3G6JCJ0_PINTA; Myb family transcription factor PHL3
STRING	Aquca_005_00644.1	7e-72	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-72	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]