PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012169
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 255aa    MW: 28588.4 Da    PI: 9.2032
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55344162PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-35659PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.6e-06200221527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 Cr+f++   C + ++Ck+aH++
  Pgl012169 200 VCRDFLK-NKCARNSSCKYAHPE 221
                6******.*************96 PP
2zf-CCCH18.73.1e-06233252526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 Cr+f+r G Ck+ ++C+F H+
  Pgl012169 233 VCRDFQR-GKCKR-ESCRFYHS 252
                7******.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9483159IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-43557IPR000571Zinc finger, CCCH-type
PfamPF146080.053656No hitNo description
SMARTSM003563.26589IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.3856990IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244195222IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017195221IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-5198224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4199221IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4200221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.558228254IPR000571Zinc finger, CCCH-type
SMARTSM003560.0049229253IPR000571Zinc finger, CCCH-type
PfamPF146080.25234251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
IRPSNIFLGP RGPPHPLPVL RSPSSVKNMT KPLVEICRDF VRGRCTREAD ECRYAHHAPT  60
AGEGDYVIVC SDHLRGKCER DSCRYFHAPE NLRSRIRDGA LGPAATLNSA HSNRGMDAAH  120
AFPSSFYDQQ VLKRMRTGDY AGDPHSWGIT PQSGAPNFHA PSMVGPSLIR PPLPLLQSST  180
LVPSPHLQSL EVNDEDRLQV CRDFLKNKCA RNSSCKYAHP EPHTKVVDNY VTVCRDFQRG  240
KCKRESCRFY HSSKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5u6l_A9e-132797376Muscleblind-like protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.121950.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A8990.0D5A899_PICSI; Uncharacterized protein