PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012233
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 252aa    MW: 28166.4 Da    PI: 5.9876
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-13933PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.46.1e-16154204151
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCk 51 
                rW++qe+laL+++r+em+ ++r+++lk+plWe+vs++++e g++r  +q +
  Pgl012233 154 RWPRQETLALLKIRSEMDANFRDASLKGPLWEDVSRRLAELGYNRRKIQKE 204
                8********************************************988855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.73E-18153205No hitNo description
PfamPF138371.4E-8153202No hitNo description
PfamPF012514.3E-12200251IPR000554Ribosomal protein S7e
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MQSTSQYGVP EVPAQFVVGR VPSSGAHSHI FSLAHDMSLS PKNSSPHPQP QSHQSSEQQQ  60
QQHHGSNQQM IAHKIRLESD SPEVAAPSPG HPKLNKSSNT TTNNYSSSNH NNNTISTDNY  120
NKQQQQQQQE VVQLGGDEDV LGSEDCERGS AGNRWPRQET LALLKIRSEM DANFRDASLK  180
GPLWEDVSRR LAELGYNRRK IQKEKNAEPN EFEESVAQAL FDLESTNQEL KSELKDLFIN  240
SASQYDISGN RX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_BH1e-1819825125540S ribosomal protein S7E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.8382e-82cone| needle| root| somatic embryo| stem| vegetative bud
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.19e-21Trihelix family protein