PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012239
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 252aa    MW: 27434 Da    PI: 9.8769
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55341299PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-31690PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.3e-08159208147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
        Pgl012239 159 RRPFSVAEVEALVHAVEKLGTGRWRDVKLRAFeqaKHRTYVDLKDKWKTL 208
                      678999********************9888888**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.112154213IPR017930Myb domain
SMARTSM007177.0E-7158211IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-11159209IPR009057Homeodomain-like
CDDcd116601.97E-18160210No hitNo description
SuperFamilySSF466891.12E-15160240IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
TAGALDQLGI AHGGKLDSVG FMLEPNPMPT SQACAEDPLF MPSRAVTQPS PRYPTGSASG  60
QTTAAEGNKS VMKSRSNKIN GTAGAEVAVT TGGRTQTETN QWTKSEYEVI NDSPHMQAGS  120
NPGALIVHPI VGAETAQGLA LVPLNHKSRG SEIGKRRIRR PFSVAEVEAL VHAVEKLGTG  180
RWRDVKLRAF EQAKHRTYVD LKDKWKTLVH TAKIAPHQRR GEPVPQELLD RVIHAHNYWT  240
DQQAKQQAEV CL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-561432491107Telomere binding protein TBP1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827448.27e-86telomere repeat-binding protein 5
RefseqXP_020527197.17e-86telomere repeat-binding protein 5
RefseqXP_020527201.17e-86telomere repeat-binding protein 5
TrEMBLW1NI311e-84W1NI31_AMBTC; Uncharacterized protein
STRINGERM948642e-85(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-46TRF-like 2