PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012248
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 252aa    MW: 27733.7 Da    PI: 8.0743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S24997719PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.64.9e-061234223
               EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
               +Cp Cg+ F++ ++L +H+   H
  Pgl012248 12 PCPSCGQIFTNTEDLAQHQAIkH 34
               7******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.9951135IPR007087Zinc finger, C2H2
PROSITE patternPS0002801134IPR007087Zinc finger, C2H2
SuperFamilySSF563999.21E-2036250No hitNo description
Gene3DG3DSA:3.90.228.101.4E-1543250IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
XEAFSFPASI CPCPSCGQIF TNTEDLAQHQ AIKHAVLVLG EEDSARTVVE IIFQSSWLKK  60
ENPICKIERI LKIHNSQKTI SKFEEYRNMV KAKAGNKLLK KDPRCIADGN ELLRFHCATF  120
ACSLGINAEC SSLCNLPSCN ICNVIRNGLS PTPKLEIAGT GKGSWVYTTA SSGKAHDWLT  180
SQENGKGKRN RAMLVCRMIA GRVKKSQDED EFIAGGFDSI AGQAGLYSNL EELFVYNPCA  240
VLPCFVVIYQ TL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022766363.19e-98uncharacterized protein LOC111311254
TrEMBLA0A1R3FVH61e-96A0A1R3FVH6_9ROSI; Putative nucleic acid binding protein
TrEMBLA0A2P5E5K86e-96A0A2P5E5K8_TREOI; Zinc finger, C2H
TrEMBLA0A443NYE62e-96A0A443NYE6_9MAGN; Uncharacterized protein
STRINGERN086393e-96(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-82C2H2-like zinc finger protein