PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl012408

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 245aa MW: 27751.6 Da PI: 6.6299

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55350284	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-21053	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	57	100	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+ +++ +++Lr+++P+ + K++K +i++ A+ Y+ +Lq Pgl012408 57 HTERKRRKILKETLFKLRSVVPNiS------KMDKQSIVQDAISYVLDLQ 100 57*******************66......***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.21E-9	49	104	No hit	No description
PROSITE profile	PS50888	13.865	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.24E-15	53	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-8	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-7	57	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-12	58	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDHQNSKLWM DMDENSGQFE WDDNDAEIVG SNPAIKTYNT DGRVVQWQQR QTSKNLHTER 60 KRRKILKETL FKLRSVVPNI SKMDKQSIVQ DAISYVLDLQ KKVQEIEDEI HALSSSNRPD 120 HNQAITSETT KPLANDNCDS IKSADMKKSS NKLIKHGKIL EVEICNVGEG AIYHVRIEGK 180 KEAGLLVKLA RALETLPLHI MNSNFCCFDE AIVSTLTLNG SSMKILGADK LEDMIRQTID 240 SIWLG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.21810	0.0	root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LRN6	4e-94	B8LRN6_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.2	9e-24	bHLH family protein