PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012513
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27834.8 Da    PI: 9.738
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-19629PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.98.6e-262171151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri+n + r+ tf kR+ g+lKKA+ELSvLCdaeva+iifs+tgk+ye++s
  Pgl012513 21 KRIQNPISRHATFYKRKGGLLKKAFELSVLCDAEVALIIFSETGKIYEFAS 71
               79***********************************************86 PP
2K-box55.72.2e-1995184998
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 + ++ e  q +l++L ++ + L+++ ++++GedL+sL++keL qLe+qL+ks ++i ++K++++ ++ + l ++ ++l+een++L++k+
  Pgl012513  95 SSLQNREIDQLQLKRLHEKADILENKRKNMVGEDLDSLTMKELDQLEKQLQKSTRRICDRKMKIFSQSSKLLEQQVRSLEEENTELHTKV 184
                56677788899****************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-331372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.1141373IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-291498IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-261535IPR002100Transcription factor, MADS-box
PfamPF003198.1E-232269IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-263550IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-265071IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.133100190IPR002487Transcription factor, K-box
PfamPF014868.4E-16104184IPR002487Transcription factor, K-box
Gene3DG3DSA:1.20.5.1704.7E-4165198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
PTSSYLVWKI PKMGKKKVEL KRIQNPISRH ATFYKRKGGL LKKAFELSVL CDAEVALIIF  60
SETGKIYEFA SHNDLTTILA KYGRQMETTR NARPSSLQNR EIDQLQLKRL HEKADILENK  120
RKNMVGEDLD SLTMKELDQL EKQLQKSTRR ICDRKMKIFS QSSKLLEQQV RSLEEENTEL  180
HTKVRSLEEE NTELHTKFNT TGDSSTSAPD LFIRASVPKT QLHLGRCDEN RDGHSFASEL  240
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-191382169MEF2C
5f28_B1e-191382169MEF2C
5f28_C1e-191382169MEF2C
5f28_D1e-191382169MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P1V31e-126A9P1V3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.18e-41AGAMOUS-like 8