PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012689
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 27417.2 Da    PI: 4.8744
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-46156PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.4e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri n s rqvtfskRr g++KKA+ELS+LC+a+va+++fsstgkly+yss
  Pgl012689  9 KRIANASARQVTFSKRRRGLFKKAQELSILCEADVALLVFSSTGKLYDYSS 59
               79***********************************************96 PP
2K-box29.92.4e-111021533687
      K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                 + l e+Le L+lk+L++Le+q e  l+ iRs+K e+l+++i+elq+k +++
  Pgl012689 102 SQDLREELEGLTLKDLEKLEEQFEMELSYIRSQKVEHLVKKINELQQKFESQ 153
                555669*****************************************98765 PP
3K-box39.42.5e-1415823024100
      K-box  24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +k++ e   +     l e+Le L+lk+L++Le+q e  l+ iRs+K e+l+++i+elq+k  ++ een++Lr +l+e
  Pgl012689 158 IKQQFEDASQD----LREELEGLTLKDLEKLEEQFEMELSCIRSQKVEHLVKKINELQQKVIQMIEENTKLRGQLNE 230
                55555554444....449******************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.422161IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.44E-34269No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-29374IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-26323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-263859IPR002100Transcription factor, MADS-box
PfamPF014869.6E-784172IPR002487Transcription factor, K-box
PROSITE profilePS512979.9129234IPR002487Transcription factor, K-box
PfamPF014864.1E-10148228IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAREKIKIKR IANASARQVT FSKRRRGLFK KAQELSILCE ADVALLVFSS TGKLYDYSSS  60
SVEVILDKYV LYPSTIQKDG QQILEFESQD PKRIIQQFED ASQDLREELE GLTLKDLEKL  120
EEQFEMELSY IRSQKVEHLV KKINELQQKF ESQDPKRIKQ QFEDASQDLR EELEGLTLKD  180
LEKLEEQFEM ELSCIRSQKV EHLVKKINEL QQKVIQMIEE NTKLRGQLNE GDGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19172172MEF2C
5f28_B2e-19172172MEF2C
5f28_C2e-19172172MEF2C
5f28_D2e-19172172MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.56770.0needle| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906595.11e-43MADS-box protein JOINTLESS
RefseqXP_023906601.11e-43MADS-box protein JOINTLESS
RefseqXP_023906610.11e-43MADS-box protein JOINTLESS
RefseqXP_023906617.11e-43MADS-box protein JOINTLESS
SwissprotQ9FUY65e-42JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA9NR511e-94A9NR51_PICSI; Uncharacterized protein
TrEMBLB8LN412e-94B8LN41_PICSI; Uncharacterized protein
STRINGVIT_00s0313g00070.t014e-42(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.15e-43MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]