PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012736
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 232aa    MW: 26016.9 Da    PI: 8.0744
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25731935PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003383105123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp C++ F++   L  H rtH
  Pgl012736  83 HECPVCHRNFTSGQALGGHKRTH 105
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-61337No hitNo description
SMARTSM00355981535IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-81536IPR007087Zinc finger, C2H2
SuperFamilySSF576673.92E-678105No hitNo description
Gene3DG3DSA:3.30.160.602.6E-481106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.40883110IPR007087Zinc finger, C2H2
SMARTSM003550.1483105IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-1183106IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
XVADGFKQEM VMRLYACKSC NKKFPSFQAL GGHRASCQLK DLPRQLVHNQ NDEGFKEAAS  60
LYRPSVETYK QSLYTEIKKV RMHECPVCHR NFTSGQALGG HKRTHSTPPA TSTNTSTSLS  120
NIEQQHLSAI KSTQELDLNM PAEDENDCIQ VQHSSAVSVN LGGDFLDSTN WPPYDYKLIS  180
YKSSQPWWME SHQPGVVKED EADSKFRSNT GFVRGRDLGC KRAGLPLITT VN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.39590.0stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.18e-18C2H2-like zinc finger protein