PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012741
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 232aa    MW: 27058.6 Da    PI: 6.6724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25776539PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.8e-0780123855
                HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +E+ RR+r++s   +L +llP  +      Kl+     e++++YI++L+
  Pgl012741  80 AEQLRRKRMKSLCTQLESLLPAtP-----AKLDRCGLFEETINYIRKLE 123
                8*********************55.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.48172122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-572124No hitNo description
SuperFamilySSF474595.89E-1073132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1073136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00278128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-580123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
GELIMASDCL FSFSFPASRT VYSNVAQRDR QVDCRVTSSR KRPSEVDLAD SQDYNDLQEK  60
VWQDVDHMMK FSSKESQIFA EQLRRKRMKS LCTQLESLLP ATPAKLDRCG LFEETINYIR  120
KLEENMSQLK RNRDNLLSIQ SGKTTNENIE IKVTVEFYDR EAIISITSQR GPRHMWRILE  180
ELENHGLDVE TSQLFTGEFF VLVFFHANFR GHISQDPAQI RTSLECRLKS TY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.169930.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-148A9NYK8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-07bHLH family protein