PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012988
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25202.4 Da    PI: 7.0616
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55341100PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-30888PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.83.7e-1530592251
               HHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeyss 51
               KKAeELS+LC+a+va+i+fsstgkl++yss
  Pgl012988 30 KKAEELSILCAADVALIVFSSTGKLHDYSS 59
               9***************************96 PP
2K-box60.47.2e-21891561986
      K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                 +++k k++ie + +++R++ G++Le Lsl++LqqLe+qL  +l+ +R +K+e+++++i+elq k +e
  Pgl012988  89 PDMKKRKQQIEDISQTLRNMHGKELEGLSLNDLQQLEEQLTMGLNCVRLQKDEYMIKEINELQDKIRE 156
                578899***********************************************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.965161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-17375IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-12323IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-122338IPR002100Transcription factor, MADS-box
PfamPF003193.7E-113057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-123859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.33984182IPR002487Transcription factor, K-box
PfamPF014862.2E-1690156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAREKIELKR IAKLRPGRSR SRRGERGRSK KAEELSILCA ADVALIVFSS TGKLHDYSSS  60
SMKMILDHYN LYSSTIQKDG PPNPELESPD MKKRKQQIED ISQTLRNMHG KELEGLSLND  120
LQQLEEQLTM GLNCVRLQKD EYMIKEINEL QDKIREGYGL HLENNDADES FFIGQSENKD  180
PQSSASVTTS AFNFRLHKSP NKYYEDSDTS LQLGLSSQSK I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18895PDMKKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.245430.0needle| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PSG61e-138C0PSG6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-36MIKC_MADS family protein