PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl013029
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 220aa    MW: 24840.2 Da    PI: 8.0163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40941081PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.3e-135196555
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               + + ErrRR+r+N+++  Lr ++P       +K++K +i e  ++YI++Lq
  Pgl013029 51 NTISERRRRRRLNEKLYSLRAIVPMI-----TKMNKTSIIEDSIDYIQQLQ 96
               6789*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0594695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1649111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-105096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1552112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-1452101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.73E-760100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
XASKMLDFTD LKFDSCACPI SSVLGVVDGS SSCNVFCSDG KRSSYGAASK NTISERRRRR  60
RLNEKLYSLR AIVPMITKMN KTSIIEDSID YIQQLQNQVR VAEEDVVRLK ENSTPTSEKK  120
TGREFSHGDY KGESIKELLE FDVSEVKENV YSICLYCKCS PRVVLEVNRV IESMEITVTY  180
ANFNSFDGYI LINIIVQRGE NGKKLQVDAL KSIIAKVIME
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15461ERRRRRRL
25560RRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.244810.0stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.25e-21bHLH family protein