PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl013039

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 219aa MW: 25246.1 Da PI: 4.9545

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55343992	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-4502	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.5	4.7e-31	20	100	1	82
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 lppGfrFhP deelv++yL++kv ++++++ ++i+evd++k+ePwdLp k+k +ekewyfFs rd+ky+tg+r+nrat++g+ Pgl013039 20 LPPGFRFHPMDEELVTYYLTQKVLDSSFSC-RAITEVDLNKCEPWDLPDKAKMGEKEWYFFSLRDRKYPTGTRTNRATEAGI 100 79**************************.89***********99999************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-32	12	99	IPR003441	NAC domain
PROSITE profile	PS51005	27.032	20	175	IPR003441	NAC domain
Pfam	PF02365	5.4E-13	21	103	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MELVNVNSKE QMNKMDDELL PPGFRFHPMD EELVTYYLTQ KVLDSSFSCR AITEVDLNKC 60 EPWDLPDKAK MGEKEWYFFS LRDRKYPTGT RTNRATEAGI HPNSYIYKTQ TDIANDRFKQ 120 CKMEPPSPLF KSSGTLKNLT VQPSSSQWIN TSSGYQHPNQ DNLEPKYGVA QQQMQNQPMV 180 SHSQETGLST EMNAEISSVV SSQRNQPYHE DAQDMDSIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-28	20	99	17	96	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-28	20	99	17	96	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-28	20	99	17	96	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-28	20	99	17	96	NO APICAL MERISTEM PROTEIN
3swm_A	2e-28	20	99	20	99	NAC domain-containing protein 19
3swm_B	2e-28	20	99	20	99	NAC domain-containing protein 19
3swm_C	2e-28	20	99	20	99	NAC domain-containing protein 19
3swm_D	2e-28	20	99	20	99	NAC domain-containing protein 19
3swp_A	2e-28	20	99	20	99	NAC domain-containing protein 19
3swp_B	2e-28	20	99	20	99	NAC domain-containing protein 19
3swp_C	2e-28	20	99	20	99	NAC domain-containing protein 19
3swp_D	2e-28	20	99	20	99	NAC domain-containing protein 19
4dul_A	2e-28	20	99	17	96	NAC domain-containing protein 19
4dul_B	2e-28	20	99	17	96	NAC domain-containing protein 19

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.4031	0.0	stem

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15170.1	1e-48	NAC family protein