PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl013046
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 219aa    MW: 24345.9 Da    PI: 6.7859
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25767880PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2001.5e-612213156374
       GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                e+le+tg+rL++fAe+lg+pfef++ v++++ ++  +le+L+v++ +alaV++    h+l+d ++s  s    +L l+++l Pkv+++veq+++h  +sF
  Pgl013046   2 EALEATGKRLSNFAETLGIPFEFHA-VSDKVGNIneNLERLKVRKVDALAVHWLQ--HSLYDVTGSDIS----TLCLLRRLCPKVITMVEQDLSH-VGSF 93 
                689**********************.799999886789****************9..999999999999....**********************.789* PP

       GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                l+rf+ea++yysa+fdsl a +p++++er++vE++ll+ ei+n++a  g +r+ + + +++Wr++l++aGF++++l  +aa+qa lll +++ +gy++ e
  Pgl013046  94 LNRFVEAIHYYSAVFDSLGAAYPEDNNERHVVEQQLLSCEIKNILAVGGPARTGELR-FHNWRDQLQQAGFSKLSLAGNAAAQATLLLGMFPCKGYTLVE 192
                ***************************************************998877.****************************************** PP

       GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                esg+l +gWkd  L+++SaWr
  Pgl013046 193 ESGTLRIGWKDICLLTASAWR 213
                ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.6091193IPR005202Transcription factor GRAS
PfamPF035145.1E-592213IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEALEATGKR LSNFAETLGI PFEFHAVSDK VGNINENLER LKVRKVDALA VHWLQHSLYD  60
VTGSDISTLC LLRRLCPKVI TMVEQDLSHV GSFLNRFVEA IHYYSAVFDS LGAAYPEDNN  120
ERHVVEQQLL SCEIKNILAV GGPARTGELR FHNWRDQLQQ AGFSKLSLAG NAAAQATLLL  180
GMFPCKGYTL VEESGTLRIG WKDICLLTAS AWRPAHHAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1111214169380Protein SCARECROW
5b3h_A1e-1111214168379Protein SCARECROW
5b3h_D1e-1111214168379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem, leaf primordia, between the cortex and the differentiating vessels in lower shoots and in root endodermis. {ECO:0000269|PubMed:11333309}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384356.11e-114PREDICTED: protein SCARECROW 2-like
SwissprotQ9AVK41e-110SCR_PEA; Protein SCARECROW
TrEMBLA0A0B4U7W61e-117A0A0B4U7W6_PINRA; SCR
TrEMBLQ0MRQ21e-117Q0MRQ2_PINSY; SCARECROW
STRINGXP_006481279.11e-112(Citrus sinensis)
STRINGXP_006429683.11e-112(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-111GRAS family protein