PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl013232
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 211aa    MW: 23285.4 Da    PI: 9.5798
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40915232PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.32.3e-42421411100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++gvi++lqqq ++l+ael+++++e
  Pgl013232  42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFACVHKVFGASNVSKMLLEVPENQRADAANSLVYEANVRIRDPVYGCMGVISTLQQQSQSLQAELNAVRSE 141
                7***********************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.31241142IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-4242139IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSKEREKVEG FNSVNRRVKR IESERVRRTM MGAQSSPNTS TPCAACKLLR RRCAQECPFS  60
PYFSPHEPQK FACVHKVFGA SNVSKMLLEV PENQRADAAN SLVYEANVRI RDPVYGCMGV  120
ISTLQQQSQS LQAELNAVRS EIMRYRCRGN AMAVAAMAVG YPTIQVTDRG TASSAISSQT  180
SDSTDFAAVS PSTVPTSDTK VAVRPWHSHL H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-48331472116LOB family transfactor Ramosa2.1
5ly0_B3e-48331472116LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821727.16e-77PREDICTED: LOB domain-containing protein 15-like
SwissprotQ8L5T52e-65LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A2R6WX819e-88A0A2R6WX81_MARPO; Uncharacterized protein
STRINGEOY200403e-76(Theobroma cacao)
STRINGcassava4.1_029925m5e-76(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.16e-66LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]