PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl013472
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 200aa    MW: 22459.2 Da    PI: 6.5309
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S24977688PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.23.5e-3124108187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+++e+laL+++r+em+ ++r+++lk+plWe+vs++++e g++r pk+Ckek+en++k+yk+ keg+ +r  ++ +++++f+qlea
  Pgl013472  24 RWPREETLALLKIRSEMDANFRDASLKGPLWEHVSRRLEELGYHRDPKKCKEKFENIHKYYKRSKEGRVGR--QDGKNYRFFSQLEA 108
                8********************************************************************97..66678*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00122183IPR001005SANT/Myb domain
PfamPF138371.1E-2123109No hitNo description
CDDcd122038.52E-272388No hitNo description
PROSITE profilePS500906.8292381IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
DDDVFGVGED CERLAGGGGS AGNRWPREET LALLKIRSEM DANFRDASLK GPLWEHVSRR  60
LEELGYHRDP KKCKEKFENI HKYYKRSKEG RVGRQDGKNY RFFSQLEALY SNNNSKPPYN  120
SNKTMNDAST ISNGGGRVQA HEDPMSARQD EDNNNLGGNF MVGTTSAGNT DLNSSEGISF  180
SSDSSEDYDE PRDSKKKKKX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.39010.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020589277.12e-52trihelix transcription factor GTL1-like
RefseqXP_020691877.17e-52trihelix transcription factor GT-2 isoform X2
TrEMBLA0A2H3Y0K64e-50A0A2H3Y0K6_PHODC; trihelix transcription factor GTL1 isoform X1
TrEMBLA0A2H3Y0M43e-50A0A2H3Y0M4_PHODC; trihelix transcription factor GTL1 isoform X2
TrEMBLA0A3S3NU272e-52A0A3S3NU27_9MAGN; Trihelix transcription factor GTL1 isoform X1
STRINGXP_008791630.16e-51(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.15e-44GT-2-like 1