PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl013512
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 22640 Da    PI: 9.6079
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-31519PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.4e-27251150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krie ++ rqvtf+kR+ng+lKKA+ LSvLCdaevav+ifs++gklye++
  Pgl013512  2 KRIEKTTSRQVTFCKRKNGLLKKAYALSVLCDAEVAVMIFSPSGKLYEFA 51
               79***********************************************8 PP
2K-box592e-2071149583
      K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                +++ ++e++ ++l++e+a+ +++i+ L++ qR+++Ge+L s+ l +L+ Le+q+e++l++iR++K+++  e+    +k+
  Pgl013512  71 TTNTTKERDIQYLKREIANREERIKILESRQRKVVGEELASCALSDLNLLESQVERGLRRIRARKERISSEENAFHRKR 149
                445589999***********************************************************99999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.85E-29175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.067154IPR002100Transcription factor, MADS-box
CDDcd002653.20E-39169No hitNo description
SMARTSM004329.3E-29153IPR002100Transcription factor, MADS-box
PfamPF003195.1E-25350IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-161631IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-163152IPR002100Transcription factor, MADS-box
PfamPF014863.1E-1575148IPR002487Transcription factor, K-box
PROSITE profilePS5129710.4580174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKRIEKTTSR QVTFCKRKNG LLKKAYALSV LCDAEVAVMI FSPSGKLYEF ANPSMQKMLE  60
RYEKCSEGSD TTNTTKERDI QYLKREIANR EERIKILESR QRKVVGEELA SCALSDLNLL  120
ESQVERGLRR IRARKERISS EENAFHRKRF VDPLYENGSV LATLASGLGS IQNSEVETQL  180
VIRPPSTKNL TCDYVNLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-183741082MEF2 CHIMERA
6byy_B9e-183741082MEF2 CHIMERA
6byy_C9e-183741082MEF2 CHIMERA
6byy_D9e-183741082MEF2 CHIMERA
6bz1_A8e-183741082MEF2 CHIMERA
6bz1_B8e-183741082MEF2 CHIMERA
6bz1_C8e-183741082MEF2 CHIMERA
6bz1_D8e-183741082MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128135RRIRARKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.283730.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLE1B4K81e-129E1B4K8_PICAB; MADS-domain transcription factor dal3 variant 2
STRINGXP_010255589.13e-48(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.42e-49AGAMOUS-like 42