PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl013655

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 193aa MW: 22443.4 Da PI: 8.7671

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S25736943	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.1	3.9e-07	32	51	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp CgksF+r n++ H+ Pgl013655 32 FSCPVCGKSFNRYNNMQMHM 51 89*****************9 PP
2	zf-C2H2	14.1	0.00014	116	138	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F + + ++H +++ Pgl013655 116 FMCRRCGKAFAVRGDWRTHEKNC 138 89*****************9987 PP
3	zf-C2H2	11.1	0.0013	145	162	5	22
TTTEEESSHHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHirt 22 +Cg F++k +Lk Hir Pgl013655 145 ICGSDFKHKRSLKDHIRA 162 8***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.13E-6	28	54	No hit	No description
Pfam	PF12874	9.5E-4	32	51	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.7E-7	32	51	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.019	32	54	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.053	32	59	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	34	54	IPR007087	Zinc finger, C2H2
SMART	SM00355	200	79	111	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.62E-7	98	136	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.8E-6	102	136	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.725	116	136	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	116	136	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	120	142	165	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MENLQQGSRR ILSDGQYWIP TPSQILIGPT QFSCPVCGKS FNRYNNMQMH MWGHGSQYRR 60 GPESLRGTQP TAMLRLPCYC CAEGCRNNID HPRAKPLKDF RTLQTHYKRK HGTKPFMCRR 120 CGKAFAVRGD WRTHEKNCGK LWFCICGSDF KHKRSLKDHI RAFGHGHAPH HEDLHTFEDE 180 DPASEIEQDD ETQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246927.1	1e-121	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-113	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1U7Z1K6	1e-119	A0A1U7Z1K6_NELNU; zinc finger protein WIP2-like
STRING	XP_010246927.1	1e-120	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-116	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]