PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl013656

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 193aa MW: 21674.3 Da PI: 8.1953

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S25770978	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.5e-31	92	149	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYG+K+vk+s++prsYYrC+ ++C+vkk+ver+ +d+ ++++tYeg+Hnhe Pgl013656 92 EDGYKWRKYGRKVVKSSPHPRSYYRCSDNNCSVKKRVERDPSDQGLLITTYEGTHNHE 149 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-32	78	151	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-27	84	151	IPR003657	WRKY domain
PROSITE profile	PS50811	30.331	86	151	IPR003657	WRKY domain
SMART	SM00774	4.7E-33	91	150	IPR003657	WRKY domain
Pfam	PF03106	6.7E-25	92	149	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
EDKGSDKNDK QEMKTECMAN SPAAQSARSQ EDQHSEICNV EEHLSEVSDG NANKTSVDGD 60 IADSKIIKKR KIKTEKGPRY AFKTRSETDV LEDGYKWRKY GRKVVKSSPH PRSYYRCSDN 120 NCSVKKRVER DPSDQGLLIT TYEGTHNHES PSVIYYIGKP IILPQQGFKP AIVLVNATLC 180 PEPVLNYAAP QAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-25	81	152	7	78	Probable WRKY transcription factor 4
2lex_A	3e-25	81	152	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6RB88	5e-72	A0A0D6RB88_ARACU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	5e-34	WRKY DNA-binding protein 50