PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl013686
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 191aa    MW: 21769.2 Da    PI: 5.1063
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55332709PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-33358PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-181664355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               y G+r+++ +g+W+AeIrdp+    r+r++lg+f+tae+Aa+a++aa+ +++g
  Pgl013686 16 YIGIRQRP-WGKWAAEIRDPKV---RARVWLGTFDTAEDAARAYDAAAWRIRG 64
               89******.**********943...6**********************88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-211573IPR016177DNA-binding domain
PfamPF008478.8E-131564IPR001471AP2/ERF domain
SMARTSM003802.1E-321578IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-311573IPR001471AP2/ERF domain
PROSITE profilePS5103223.3541572IPR001471AP2/ERF domain
PRINTSPR003675.9E-111627IPR001471AP2/ERF domain
CDDcd000189.88E-191674No hitNo description
PRINTSPR003675.9E-113854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSKRRKGGKR NKKYVYIGIR QRPWGKWAAE IRDPKVRARV WLGTFDTAED AARAYDAAAW  60
RIRGKKAKLN FSDVHRSVDT DLNAESGSSV SNLVSDDYTA NAKTHDAVDG MKKMEEETQN  120
VGDHAAASSC MNMWNTGDWI DYSPVEVLAA SVDMDFSLQY DDWAWSSCQE VGVDDLEESY  180
PYSMFHLWMF D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-211671662ATERF1
3gcc_A1e-211671662ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ACE81e-138D5ACE8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-20ERF family protein