PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl013699

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 190aa MW: 21256.7 Da PI: 7.0984

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55344761	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-11597	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.7	1.3e-40	58	152	6	100
DUF260 6 kvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k+lrr+CakdC++apyfp+++p+kfa vh++FGasnv k+l++lpee+r da+ss+vyeA+ar+rdP+yG+vg i++lqqq++ lk++lal+++e Pgl013699 58 KLLRRRCAKDCIFAPYFPSDDPHKFASVHRVFGASNVNKMLQDLPEEQRGDAVSSMVYEANARVRDPIYGCVGAISSLQQQVAILKSQLALAQAE 152 89*****************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.556	52	153	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.7E-40	57	150	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
XTLGAGFEGQ FSLSPEXNEG GFFSGRGSCE IVREEIDLKN ERNHQQIQQW HVTVRCLKLL 60 RRRCAKDCIF APYFPSDDPH KFASVHRVFG ASNVNKMLQD LPEEQRGDAV SSMVYEANAR 120 VRDPIYGCVG AISSLQQQVA ILKSQLALAQ AEIVHLKMRQ SQTSLSALFT NTNSKIMMMD 180 EGSSPTHMLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-40	58	154	16	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-40	58	154	16	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.6562	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960093.1	2e-63	LOB domain-containing protein 4-like isoform X2
Refseq	XP_025694992.1	2e-63	LOB domain-containing protein 4 isoform X2
Swissprot	Q9SHE9	2e-53	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A444ZDK5	1e-61	A0A444ZDK5_ARAHY; Uncharacterized protein
TrEMBL	A0A445DIX4	1e-61	A0A445DIX4_ARAHY; Uncharacterized protein
STRING	XP_004294159.1	2e-62	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-50	LOB domain-containing protein 4