PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl013908

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TCP

Protein Properties

Length: 182aa MW: 19995.5 Da PI: 9.9111

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-46692	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.8	1.7e-33	31	102	3	71
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...s 71 +k+ +++++hTkv+gR+RRvR++a aar+F+L++eLG+++ ++ti+WLl++a+pai ++tgt++ +a s Pgl013908 31 AKRPSTKDRHTKVNGRGRRVRIPAASAARIFQLTRELGHKSHGETIQWLLNKAEPAIMAATGTGTVPAlpmS 102 6999***********************************************************888874331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.4E-28	35	115	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.903	36	90	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MSSEEVQNQS EQRLLQEGPQ NNNPARKTLV AKRPSTKDRH TKVNGRGRRV RIPAASAARI 60 FQLTRELGHK SHGETIQWLL NKAEPAIMAA TGTGTVPALP MSIVGPVSSY PSKLQQHPQT 120 PPSVHGILAL PAFGSSDGMG FEFQGGQLSH RPYTSMLWGS EDQALDEHRI DHSLKQSNCH 180 CY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.15762	4e-95	somatic embryo

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541424.1	3e-41	transcription factor TCP11
Refseq	XP_028196567.1	3e-41	transcription factor TCP11-like
TrEMBL	H9MA79	1e-48	H9MA79_PINRA; Uncharacterized protein (Fragment)
TrEMBL	H9W0S8	1e-48	H9W0S8_PINTA; Uncharacterized protein (Fragment)
STRING	GLYMA13G20710.2	1e-40	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-36	TCP family protein