PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl013978

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 179aa MW: 18928 Da PI: 4.6016

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-5734	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	153	176	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C++ F++ L +H H Pgl013978 153 FNCQSCSRDFTSEGALSSHKAAkH 176 78*****************87666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.219	153	179	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	155	176	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
XDDDDEDMED VSESDDGDEE DDSDEESDDE DEEDEETPKP AAGKKRPMPD SVTKSPSTDK 60 KAKISTPAGG QKPENAAARD YWESLILAGT DKKGADKGRK TEHVATPYPK QGGKGPASGV 120 KGKETPLGSK HQTPGSKGKN VSTPESGKKS GQFNCQSCSR DFTSEGALSS HKAAKHGGK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.6790	1e-140	cone\| root\| somatic embryo\| stem\| vegetative bud

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LKQ7	9e-73	B8LKQ7_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	2e-08	histone deacetylase 2C