PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl014087

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 173aa MW: 20006.3 Da PI: 7.9744

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-175a-Picea_glauca-11709	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	70.4	2.1e-22	25	80	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r +++k+l+L++rqVk+WFqNrR+++k Pgl014087 25 KKRYHRHTPQQIQELEALFKECPHPDEKQRLDISKRLNLETRQVKFWFQNRRTQMK 80 688999***********************************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-21	8	82	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.4E-23	10	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.313	22	82	IPR001356	Homeobox domain
SMART	SM00389	2.2E-19	23	86	IPR001356	Homeobox domain
Pfam	PF00046	5.8E-20	25	80	IPR001356	Homeobox domain
CDD	cd00086	4.89E-17	25	82	No hit	No description
PROSITE pattern	PS00027	0	57	80	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
XRSGSDNMDG GSGDDQDAAD NPPRKKRYHR HTPQQIQELE ALFKECPHPD EKQRLDISKR 60 LNLETRQVKF WFQNRRTQMK TQLERHENSI LRQENEKLRS ENLSIRDAMR NPICTNCGGP 120 AVLGEMSFEE QQLRIENARL KEELDRLCAL AGEFFGRPVP SMASVPLMPK SSL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002272264.2	1e-103	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Refseq	XP_010661561.1	1e-103	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Refseq	XP_010661562.1	1e-103	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
Swissprot	Q0WV12	3e-89	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	Q8S555	1e-111	Q8S555_PICAB; Homeodomain protein HB2
STRING	VIT_15s0048g02000.t01	1e-103	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	3e-81	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]