PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl014401
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 156aa    MW: 17627.6 Da    PI: 4.3135
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S29742041PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.8e-09109146342
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 
                       ++++E++l+ ++ ++lG + W++Ia +++ gRt +++  
        Pgl014401 109 GFSEDEEDLISRLYNLLGQR-WALIAGRIP-GRTTEEIEK 146
                      69*****************9.*********.****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.7E-5106154IPR001005SANT/Myb domain
PfamPF002494.2E-8108147IPR001005SANT/Myb domain
SuperFamilySSF466892.61E-6109147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-10110147IPR009057Homeodomain-like
CDDcd001677.83E-7110148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
AQLPVMQDSL SSIQSTNRNN LPCSHAYLFT SPHPKILEFT VFTVAALSFS LDCCYYLQRT  60
VLPSGIGGFF FNSHFLNSQS TMSDADCLSS EDNVSMDSPD DVNEDYKMGF SEDEEDLISR  120
LYNLLGQRWA LIAGRIPGRT TEEIEKYCSR RYGSEY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.164990.0root
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.15e-17MYB_related family protein