PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl014684
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 140aa    MW: 15555.5 Da    PI: 4.0214
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40953143PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26074.42.2e-23393999
     DUF260  9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
               +++C ++C++     +++ +kfa++h++FGa nv+kl+++lp ++  +a++s+vyeA ar++dP  G++g+i++lq q++ l++++ ++++
  Pgl014684  3 KKECLDNCTMLYRSTSNDLHKFAILHEVFGACNVIKLIQELPSDQGLEAINSMVYEASARLEDPAFGCTGIIQQLQLQISDLESQITSTQT 93
               789******998889999******************************************************************9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.728195IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-22392IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEKKECLDNC TMLYRSTSND LHKFAILHEV FGACNVIKLI QELPSDQGLE AINSMVYEAS  60
ARLEDPAFGC TGIIQQLQLQ ISDLESQITS TQTVIQKIRS QQAQLLASIP GFNDKFNPAI  120
STVNDADEED EDLSNSNLMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2139319109LOB family transfactor Ramosa2.1
5ly0_B4e-2139319109LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.92910.0stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P1U32e-65A9P1U3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.16e-23LOB domain-containing protein 11