PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl014783
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 133aa    MW: 15121.2 Da    PI: 8.7641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55330865PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-14840PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-1262107655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+      k  + a++L +AveY+k Lq
  Pgl014783  62 SIAERVRRTRISDRIRKLQELVPNM----EKQTNTADMLDEAVEYVKLLQ 107
                689*********************7....467***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.50756106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1659121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-960111No hitNo description
Gene3DG3DSA:4.10.280.101.5E-1661119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1162112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-962107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
DSGLIFRKLE GEARRHSASA LANHHFGLYE SGSSEIALEK ILEESVPCRI RAKRGCATHP  60
RSIAERVRRT RISDRIRKLQ ELVPNMEKQT NTADMLDEAV EYVKLLQKKV QELSEKQCKC  120
DCASREQADV NKA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.51160.0needle| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271390.13e-49PREDICTED: transcription factor bHLH80 isoform X2
RefseqXP_012075470.13e-49transcription factor bHLH80
SwissprotQ9C8P88e-48BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2P5A9155e-49A0A2P5A915_PARAD; Basic helix-loop-helix transcription factor
STRINGVIT_18s0041g00690.t011e-48(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-39bHLH family protein